Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
461 |
| Pairs without alignments under any condition |
9352 |
| Pairs that did not map uniquely |
187 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
24900 |
| Methylated C's in CpG context |
503 |
| Methylated C's in CHG context |
344 |
| Methylated C's in CHH context |
1425 |
| Methylated C's in Unknown context |
1 |
| Unmethylated C's in CpG context |
279 |
| Unmethylated C's in CHG context |
4404 |
| Unmethylated C's in CHH context |
17945 |
| Unmethylated C's in Unknown context |
15 |
| Percentage methylation (CpG context) |
64.3% |
| Percentage methylation (CHG context) |
7.2% |
| Percentage methylation (CHH context) |
7.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
224 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
237 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
461 |
| Unique alignments |
461 |
| Duplicates removed |
0 |
| Duplicated alignments were found at 0 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
16852 |
| Methylated C's in CpG context |
340 |
| Methylated C's in CHG context |
240 |
| Methylated C's in CHH context |
988 |
| Unmethylated C's in CpG context |
192 |
| Unmethylated C's in CHG context |
2974 |
| Unmethylated C's in CHH context |
12118 |
| Percentage methylation (CpG context) |
63.9% |
| Percentage methylation (CHG context) |
7.5% |
| Percentage methylation (CHH context) |
7.5% |
|
|
M-Bias Plot
